Hi, I'm sure this isn't going to help much but hidden files work ok here (SCCM 2007 SP2 R3, Client Windows 7 x64)
I think I recreated your test correctly?!;
Package-------------------------
Hidden.txt (hidden file)
Visible.txt
run.bat (echo success > c:\run.log)
-------------------------
Whether or not a user is logged on
Ignore windows
Allow restart
Download content and run locally
No interaction
----------------------------
downloaded and ran ok (tried from a std secondary DP and a branch)
I'm afraid I have no idea why it's not working BUT at least you are not crazy
:)
EDIT: Just tried as an option advert and an interactive, both work.
<message edited by Smiley1244 on Tuesday, February 21, 2012 2:23 AM>